Capturing dolly varden for foraging experiments

We had to capture a small number of grayling or dolly varden this year to begin experiments on their feeding behavior and learn how to adjust the lab environment for their capabilities. By the time we were ready to receive fish (October 1st), winter was already creeping in on our study stream in the foothills of the Alaska Range.

View downstream from previous pool


My job was to bushwhack up the creek with a bucket of water and a bunch of other supplies to catch fish and keep them safe for transport. I tried using my fly rod and some collapsible minnow traps, and I also brought a GoPro on a telescoping pole with an HDMI live viewer to scope out the locations of fish I might not find otherwise.

Sampling gear


It was generally more difficult to find fish at this time of year than during the summer. Grayling were nowhere to be seen, but I found a few dolly varden in the biggest pools. The minnow traps were completely ineffective, even when placed in a pool right next to dollies I found on camera. But my fly fishing skills did not fail me.


Good dolly


Like the Chinook salmon, the dollies we collected survived the trip to Georgia in great shape. However, I was asked to send a few more a couple weeks later. Unfortunately, conditions on the creek were not very conducive to catching fish.

2014-10-12-0067_ 2014-10-12-0066_

Not wanting to completely give up after the long drive, my friend Trevor (a labmate at UAF who also finished his Ph.D. this summer) and I hiked three miles up the icy river bed searching for fish. We stuck the GoPro through gaps in the ice to investigate all sorts of likely habitat, but there were almost no fish to be found — just a few that spooked out of the shallowed riffles and were long gone before we could try to catch them.


The only fish we could have collected was a slimy sculpin we found, frozen solid and perfectly preserved, out in the open on top of the ice. We left it to rest in peace.

Capturing Chinook salmon fry for foraging experiments

Part of our project involves sending a small number of juvenile Chinook salmon to our laboratory in Georgia, where we can test their feeding behavior in a controlled environment varying a single variable, such as water velocity, at a time. (Needless to say, we are in close contact with Fish & Game throughout this process and maintain the required permits in both states.) It was near the end of the Alaska field season before the lab was ready to receive fish.

Home logjam of most of our Chinook


A driftwood fire helped me and my field assistant (this time, my wife) keep warm while the minnow traps soaked in a logjam where we saw some juvenile Chinook salmon.

Passing the time


It didn’t take long for the traps to gather enough fish.

Extra trapped fish we released


I packaged the fish very carefully in multiple heavy-duty aquarium bags, filled with oxygen, and surrounded by ice packs in insulated seafood shipping containers. Then I sent them on their way via Alaska Airlines, taking the same route to Atlanta that any human passenger would. In less than 24 hours they were acclimating in their new home.


As of this writing, four months later, they are still alive and well in the lab and providing valuable data in ongoing feeding experiments.

Trying to film big grayling

From August 23-25, 2014, my dad and I camped out on the Richardson Clearwater to try to collect 3-D video foraging data on adult grayling using the GoPros. We found one of the only good campsites on the river, although it was well hidden.

2014-08-24-0054_The weather and scenery were amazing the whole time.



In addition to filming, we also caught some fish to compare diet samples with the ones we caught a month before.

2014-08-25-0060_The video we shot of grayling turned out to be disappointing. The fish were mostly in water fast and deep enough that it was difficult to place the cameras nearby. When we did, our presence spooked the fish, and they eventually returned to the general area but not to their specific original positions in front of the cameras. Unlike Chinook salmon I’ve filmed previously with steady success, the grayling in this stream seem to range over an area large and uniform enough that when they’re disturbed they have no strong urge to return to the same spot anytime soon.


Although this stymied our efforts to shoot good footage on this trip, it was very valuable going into the off-season before our first real field season. It told us that we need to figure out a way to place the cameras in faster, deeper water than expected (i.e. devise a new anchoring system) and that we need to find a way to keep the cameras running for a very long time, so they’re ready when the fish eventually do return to suitable positions. This is exactly the kind of thing we needed to figure out while we still have the whole winter to engineer our solutions.




Testing GoPros on Chena River Chinook salmon

August 22, 2014 was a day trip to one of our Chena Chinook study sites to test the second of our two camera systems. Much less complicated than the big Nikons we tested and troubleshot previously, the GoPros were able to shoot pretty good video right away. (My experience filming Chinook salmon also made it easier than testing the big cameras on other fish.)

I had more family visiting and enlisted my father (left) and father-in-law (right) to help assemble the 3-D video calibration frame.

2014-08-22-0050_We were also joined by Bill Carter from the U.S. Fish and Wildlife Service, who wanted to learn how to deploy the 3-D video system with GoPros for use on a sheefish project later in the year.

2014-08-22-0052_It’s great that we had so much willing help for equipment testing during this pilot field season. Next year, we will have paid technicians.


First test of our 3-D video system

In late August of 2014 my dad, a recently retired Wisconsin DNR fish biologist, flew up to Alaska to help with a week or so of intense fieldwork. We relied on volunteers this summer because we didn’t have enough fieldwork to justify hiring a technician, but it was very valuable to have him up here and be working with the same person for several days in a row.

On August 21st, we tested our main underwater video system in a relatively deep pool in Panguingue Creek.



The system consists of a side-by-side pair of Nikon DSLRs in underwater housings, with HDMI connections wired to Atomos viewer/recorders, so we can see what the cameras are seeing at all times and make sure they’re placed correctly.


We need a better holder for these

We use 2 cameras instead of 1 because the side-by-side views allow us to use 3-D video measurement methods with the VidSync software and capture the exact 3-D coordinates of every action of the fish we want to measure. To enable those measurements, we also film a calibration grid, pictured below.

2014-08-21-0047_We didn’t get any good fish footage out of this trip, but that’s to be expected from the first test of complicated new equipment. We did learn a great deal about the quirks and limitations of our technology, and developed a good understanding of what I would need to buy, tweak, calibrate, or hack to make everything work smoothly when we begin real data collection next summer.